Refactor
This commit is contained in:
commit
e63239ed47
98
.clang-format
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98
.clang-format
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@ -0,0 +1,98 @@
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AccessModifierOffset: -2
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||||
AlignAfterOpenBracket: DontAlign
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||||
AlignConsecutiveAssignments: false
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||||
AlignConsecutiveDeclarations: false
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||||
AlignEscapedNewlines: Left
|
||||
AlignOperands: true
|
||||
AlignTrailingComments: false
|
||||
AllowAllParametersOfDeclarationOnNextLine: false
|
||||
AllowShortBlocksOnASingleLine: true
|
||||
AllowShortCaseLabelsOnASingleLine: false
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||||
AllowShortFunctionsOnASingleLine: All
|
||||
AllowShortIfStatementsOnASingleLine: true
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||||
AllowShortLoopsOnASingleLine: true
|
||||
AlwaysBreakAfterDefinitionReturnType: None
|
||||
AlwaysBreakAfterReturnType: None
|
||||
AlwaysBreakBeforeMultilineStrings: true
|
||||
AlwaysBreakTemplateDeclarations: false
|
||||
BinPackArguments: false
|
||||
BinPackParameters: false
|
||||
BraceWrapping:
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AfterClass: true
|
||||
AfterControlStatement: false
|
||||
AfterEnum: false
|
||||
AfterFunction: true
|
||||
AfterNamespace: false
|
||||
AfterObjCDeclaration: false
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||||
AfterStruct: true
|
||||
AfterUnion: false
|
||||
BeforeCatch: false
|
||||
BeforeElse: false
|
||||
IndentBraces: false
|
||||
SplitEmptyFunction: false
|
||||
SplitEmptyNamespace: true
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||||
SplitEmptyRecord: true
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||||
BreakAfterJavaFieldAnnotations: true
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BreakBeforeBinaryOperators: NonAssignment
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BreakBeforeBraces: Custom
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BreakBeforeInheritanceComma: true
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BreakBeforeTernaryOperators: true
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BreakConstructorInitializers: BeforeColon
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BreakConstructorInitializersBeforeComma: false
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BreakStringLiterals: true
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||||
ColumnLimit: 0
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||||
CommentPragmas: '^ IWYU pragma:'
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||||
CompactNamespaces: false
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||||
ConstructorInitializerAllOnOneLineOrOnePerLine: false
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||||
ConstructorInitializerIndentWidth: 2
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ContinuationIndentWidth: 2
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Cpp11BracedListStyle: false
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DerivePointerAlignment: false
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DisableFormat: false
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ExperimentalAutoDetectBinPacking: true
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FixNamespaceComments: true
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ForEachMacros:
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- foreach
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- Q_FOREACH
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- BOOST_FOREACH
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IncludeCategories:
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- Priority: 2
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Regex: ^"(llvm|llvm-c|clang|clang-c)/
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- Priority: 3
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Regex: ^(<|"(gtest|gmock|isl|json)/)
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- Priority: 1
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Regex: .*
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IncludeIsMainRegex: (Test)?$
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IndentCaseLabels: false
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IndentWidth: 2
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IndentWrappedFunctionNames: true
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JavaScriptQuotes: Leave
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JavaScriptWrapImports: true
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KeepEmptyLinesAtTheStartOfBlocks: true
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Language: Cpp
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MacroBlockBegin: ''
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MacroBlockEnd: ''
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MaxEmptyLinesToKeep: 2
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NamespaceIndentation: Inner
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ObjCBlockIndentWidth: 7
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ObjCSpaceAfterProperty: true
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ObjCSpaceBeforeProtocolList: false
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PointerAlignment: Right
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ReflowComments: true
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SortIncludes: false
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SortUsingDeclarations: false
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SpaceAfterCStyleCast: false
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SpaceAfterTemplateKeyword: false
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SpaceBeforeAssignmentOperators: true
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SpaceBeforeParens: ControlStatements
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SpaceInEmptyParentheses: false
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SpacesBeforeTrailingComments: 0
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SpacesInAngles: false
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SpacesInCStyleCastParentheses: false
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SpacesInContainerLiterals: true
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SpacesInParentheses: false
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SpacesInSquareBrackets: false
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Standard: Cpp11
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TabWidth: 8
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UseTab: Never
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|
7
.clang-tidy
Normal file
7
.clang-tidy
Normal file
@ -0,0 +1,7 @@
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---
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Checks: '*,-fuchsia-*,-google-*,-zircon-*,-abseil-*,-modernize-use-trailing-return-type,-llvm*,-readability-magic-numbers,-cppcoreguidelines-avoid-magic-numbers'
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WarningsAsErrors: ''
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HeaderFilterRegex: ''
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FormatStyle: none
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|
28
.gitignore
vendored
Normal file
28
.gitignore
vendored
Normal file
@ -0,0 +1,28 @@
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# Build directories and binary files
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build/
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out/
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cmake-build-*/
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# IDE files
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.vs/
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.idea/
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.vscode/
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!.vscode/settings.json
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!.vscode/tasks.json
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!.vscode/launch.json
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!.vscode/extensions.json
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*.swp
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*~
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# OS Generated Files
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.DS_Store
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.AppleDouble
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.LSOverride
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._*
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.Spotlight-V100
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.Trashes
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.Trash-*
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$RECYCLE.BIN/
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.TemporaryItems
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ehthumbs.db
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Thumbs.db
|
81
CMakeLists.txt
Normal file
81
CMakeLists.txt
Normal file
@ -0,0 +1,81 @@
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cmake_minimum_required(VERSION 3.15)
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# Set the project name to your project name, my project isn't very descriptive
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project(myproject CXX)
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include(cmake/StandardProjectSettings.cmake)
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include(cmake/PreventInSourceBuilds.cmake)
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# Link this 'library' to set the c++ standard / compile-time options requested
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add_library(project_options INTERFACE)
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target_compile_features(project_options INTERFACE cxx_std_20)
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if(CMAKE_CXX_COMPILER_ID MATCHES ".*Clang")
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option(ENABLE_BUILD_WITH_TIME_TRACE "Enable -ftime-trace to generate time tracing .json files on clang" OFF)
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if(ENABLE_BUILD_WITH_TIME_TRACE)
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target_compile_options(project_options INTERFACE -ftime-trace)
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endif()
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endif()
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# Link this 'library' to use the warnings specified in CompilerWarnings.cmake
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add_library(project_warnings INTERFACE)
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# enable cache system
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include(cmake/Cache.cmake)
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# Add linker configuration
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include(cmake/Linker.cmake)
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configure_linker(project_options)
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# standard compiler warnings
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include(cmake/CompilerWarnings.cmake)
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set_project_warnings(project_warnings)
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# sanitizer options if supported by compiler
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include(cmake/Sanitizers.cmake)
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enable_sanitizers(project_options)
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# enable doxygen
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include(cmake/Doxygen.cmake)
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enable_doxygen()
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# allow for static analysis options
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include(cmake/StaticAnalyzers.cmake)
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option(BUILD_SHARED_LIBS "Enable compilation of shared libraries" OFF)
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option(ENABLE_TESTING "Enable Test Builds" ON)
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option(ENABLE_FUZZING "Enable Fuzzing Builds" OFF)
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# Very basic PCH example
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option(ENABLE_PCH "Enable Precompiled Headers" OFF)
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if(ENABLE_PCH)
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# This sets a global PCH parameter, each project will build its own PCH, which is a good idea if any #define's change
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#
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# consider breaking this out per project as necessary
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target_precompile_headers(
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project_options
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INTERFACE
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<vector>
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<string>
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||||
<map>
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<utility>)
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endif()
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||||
option(ENABLE_CONAN "Use Conan for dependency management" ON)
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if(ENABLE_CONAN)
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include(cmake/Conan.cmake)
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run_conan()
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endif()
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if(ENABLE_TESTING)
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enable_testing()
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message("Building Tests.")
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add_subdirectory(test)
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endif()
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if(ENABLE_FUZZING)
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message("Building Fuzz Tests, using fuzzing sanitizer https://www.llvm.org/docs/LibFuzzer.html")
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add_subdirectory(fuzz_test)
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endif()
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add_subdirectory(src)
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|
29
cmake/Cache.cmake
Normal file
29
cmake/Cache.cmake
Normal file
@ -0,0 +1,29 @@
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option(ENABLE_CACHE "Enable cache if available" ON)
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if(NOT ENABLE_CACHE)
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return()
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endif()
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set(CACHE_OPTION
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"ccache"
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CACHE STRING "Compiler cache to be used")
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set(CACHE_OPTION_VALUES "ccache" "sccache")
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set_property(CACHE CACHE_OPTION PROPERTY STRINGS ${CACHE_OPTION_VALUES})
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list(
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FIND
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CACHE_OPTION_VALUES
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${CACHE_OPTION}
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CACHE_OPTION_INDEX)
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if(${CACHE_OPTION_INDEX} EQUAL -1)
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message(
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STATUS
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"Using custom compiler cache system: '${CACHE_OPTION}', explicitly supported entries are ${CACHE_OPTION_VALUES}")
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||||
endif()
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||||
|
||||
find_program(CACHE_BINARY ${CACHE_OPTION})
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||||
if(CACHE_BINARY)
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||||
message(STATUS "${CACHE_OPTION} found and enabled")
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set(CMAKE_CXX_COMPILER_LAUNCHER ${CACHE_BINARY})
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||||
else()
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||||
message(WARNING "${CACHE_OPTION} is enabled but was not found. Not using it")
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endif()
|
79
cmake/CompilerWarnings.cmake
Normal file
79
cmake/CompilerWarnings.cmake
Normal file
@ -0,0 +1,79 @@
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# from here:
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||||
#
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||||
# https://github.com/lefticus/cppbestpractices/blob/master/02-Use_the_Tools_Available.md
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||||
|
||||
function(set_project_warnings project_name)
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||||
option(WARNINGS_AS_ERRORS "Treat compiler warnings as errors" ON)
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||||
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||||
set(MSVC_WARNINGS
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||||
/W4 # Baseline reasonable warnings
|
||||
/w14242 # 'identifier': conversion from 'type1' to 'type1', possible loss of data
|
||||
/w14254 # 'operator': conversion from 'type1:field_bits' to 'type2:field_bits', possible loss of data
|
||||
/w14263 # 'function': member function does not override any base class virtual member function
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||||
/w14265 # 'classname': class has virtual functions, but destructor is not virtual instances of this class may not
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||||
# be destructed correctly
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||||
/w14287 # 'operator': unsigned/negative constant mismatch
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||||
/we4289 # nonstandard extension used: 'variable': loop control variable declared in the for-loop is used outside
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||||
# the for-loop scope
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/w14296 # 'operator': expression is always 'boolean_value'
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||||
/w14311 # 'variable': pointer truncation from 'type1' to 'type2'
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||||
/w14545 # expression before comma evaluates to a function which is missing an argument list
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||||
/w14546 # function call before comma missing argument list
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||||
/w14547 # 'operator': operator before comma has no effect; expected operator with side-effect
|
||||
/w14549 # 'operator': operator before comma has no effect; did you intend 'operator'?
|
||||
/w14555 # expression has no effect; expected expression with side- effect
|
||||
/w14619 # pragma warning: there is no warning number 'number'
|
||||
/w14640 # Enable warning on thread un-safe static member initialization
|
||||
/w14826 # Conversion from 'type1' to 'type_2' is sign-extended. This may cause unexpected runtime behavior.
|
||||
/w14905 # wide string literal cast to 'LPSTR'
|
||||
/w14906 # string literal cast to 'LPWSTR'
|
||||
/w14928 # illegal copy-initialization; more than one user-defined conversion has been implicitly applied
|
||||
/permissive- # standards conformance mode for MSVC compiler.
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||||
)
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||||
|
||||
set(CLANG_WARNINGS
|
||||
-Wall
|
||||
-Wextra # reasonable and standard
|
||||
-Wshadow # warn the user if a variable declaration shadows one from a parent context
|
||||
-Wnon-virtual-dtor # warn the user if a class with virtual functions has a non-virtual destructor. This helps
|
||||
# catch hard to track down memory errors
|
||||
-Wold-style-cast # warn for c-style casts
|
||||
-Wcast-align # warn for potential performance problem casts
|
||||
-Wunused # warn on anything being unused
|
||||
-Woverloaded-virtual # warn if you overload (not override) a virtual function
|
||||
-Wpedantic # warn if non-standard C++ is used
|
||||
-Wconversion # warn on type conversions that may lose data
|
||||
-Wsign-conversion # warn on sign conversions
|
||||
-Wnull-dereference # warn if a null dereference is detected
|
||||
-Wdouble-promotion # warn if float is implicit promoted to double
|
||||
-Wformat=2 # warn on security issues around functions that format output (ie printf)
|
||||
-Wimplicit-fallthrough # warn on statements that fallthrough without an explicit annotation
|
||||
)
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||||
|
||||
if(WARNINGS_AS_ERRORS)
|
||||
set(CLANG_WARNINGS ${CLANG_WARNINGS} -Werror)
|
||||
set(MSVC_WARNINGS ${MSVC_WARNINGS} /WX)
|
||||
endif()
|
||||
|
||||
set(GCC_WARNINGS
|
||||
${CLANG_WARNINGS}
|
||||
-Wmisleading-indentation # warn if indentation implies blocks where blocks do not exist
|
||||
-Wduplicated-cond # warn if if / else chain has duplicated conditions
|
||||
-Wduplicated-branches # warn if if / else branches have duplicated code
|
||||
-Wlogical-op # warn about logical operations being used where bitwise were probably wanted
|
||||
-Wuseless-cast # warn if you perform a cast to the same type
|
||||
)
|
||||
|
||||
if(MSVC)
|
||||
set(PROJECT_WARNINGS ${MSVC_WARNINGS})
|
||||
elseif(CMAKE_CXX_COMPILER_ID MATCHES ".*Clang")
|
||||
set(PROJECT_WARNINGS ${CLANG_WARNINGS})
|
||||
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
|
||||
set(PROJECT_WARNINGS ${GCC_WARNINGS})
|
||||
else()
|
||||
message(AUTHOR_WARNING "No compiler warnings set for '${CMAKE_CXX_COMPILER_ID}' compiler.")
|
||||
endif()
|
||||
|
||||
target_compile_options(${project_name} INTERFACE ${PROJECT_WARNINGS})
|
||||
|
||||
endfunction()
|
58
cmake/Conan.cmake
Normal file
58
cmake/Conan.cmake
Normal file
@ -0,0 +1,58 @@
|
||||
macro(run_conan)
|
||||
# Download automatically, you can also just copy the conan.cmake file
|
||||
if(NOT EXISTS "${CMAKE_BINARY_DIR}/conan.cmake")
|
||||
message(
|
||||
STATUS
|
||||
"Downloading conan.cmake from https://github.com/conan-io/cmake-conan")
|
||||
file(
|
||||
DOWNLOAD
|
||||
"https://raw.githubusercontent.com/conan-io/cmake-conan/v0.16.1/conan.cmake"
|
||||
"${CMAKE_BINARY_DIR}/conan.cmake"
|
||||
EXPECTED_HASH
|
||||
SHA256=396e16d0f5eabdc6a14afddbcfff62a54a7ee75c6da23f32f7a31bc85db23484
|
||||
TLS_VERIFY ON)
|
||||
endif()
|
||||
|
||||
set(ENV{CONAN_REVISIONS_ENABLED} 1)
|
||||
list(APPEND CMAKE_MODULE_PATH ${CMAKE_BINARY_DIR})
|
||||
list(APPEND CMAKE_PREFIX_PATH ${CMAKE_BINARY_DIR})
|
||||
|
||||
include(${CMAKE_BINARY_DIR}/conan.cmake)
|
||||
|
||||
# Add (or remove) remotes as needed
|
||||
# conan_add_remote(NAME conan-center URL https://conan.bintray.com)
|
||||
conan_add_remote(NAME cci URL https://center.conan.io INDEX 0)
|
||||
conan_add_remote(
|
||||
NAME bincrafters URL
|
||||
https://bincrafters.jfrog.io/artifactory/api/conan/public-conan)
|
||||
|
||||
# For multi configuration generators, like VS and XCode
|
||||
if(NOT CMAKE_CONFIGURATION_TYPES)
|
||||
message(STATUS "Single configuration build!")
|
||||
set(LIST_OF_BUILD_TYPES ${CMAKE_BUILD_TYPE})
|
||||
else()
|
||||
message(STATUS "Multi-configuration build: '${CMAKE_CONFIGURATION_TYPES}'!")
|
||||
set(LIST_OF_BUILD_TYPES ${CMAKE_CONFIGURATION_TYPES})
|
||||
endif()
|
||||
|
||||
foreach(TYPE ${LIST_OF_BUILD_TYPES})
|
||||
message(STATUS "Running Conan for build type '${TYPE}'")
|
||||
|
||||
# Detects current build settings to pass into conan
|
||||
conan_cmake_autodetect(settings BUILD_TYPE ${TYPE})
|
||||
|
||||
# PATH_OR_REFERENCE ${CMAKE_SOURCE_DIR} is used to tell conan to process
|
||||
# the external "conanfile.py" provided with the project
|
||||
# Alternatively a conanfile.txt could be used
|
||||
conan_cmake_install(
|
||||
PATH_OR_REFERENCE
|
||||
${CMAKE_SOURCE_DIR}
|
||||
BUILD
|
||||
missing
|
||||
# Pass compile-time configured options into conan
|
||||
OPTIONS
|
||||
SETTINGS
|
||||
${settings})
|
||||
endforeach()
|
||||
|
||||
endmacro()
|
11
cmake/Doxygen.cmake
Normal file
11
cmake/Doxygen.cmake
Normal file
@ -0,0 +1,11 @@
|
||||
function(enable_doxygen)
|
||||
option(ENABLE_DOXYGEN "Enable doxygen doc builds of source" OFF)
|
||||
if(ENABLE_DOXYGEN)
|
||||
set(DOXYGEN_CALLER_GRAPH YES)
|
||||
set(DOXYGEN_CALL_GRAPH YES)
|
||||
set(DOXYGEN_EXTRACT_ALL YES)
|
||||
find_package(Doxygen REQUIRED dot)
|
||||
doxygen_add_docs(doxygen-docs ${PROJECT_SOURCE_DIR})
|
||||
|
||||
endif()
|
||||
endfunction()
|
33
cmake/Linker.cmake
Normal file
33
cmake/Linker.cmake
Normal file
@ -0,0 +1,33 @@
|
||||
option(ENABLE_USER_LINKER "Enable a specific linker if available" OFF)
|
||||
|
||||
include(CheckCXXCompilerFlag)
|
||||
|
||||
set(USER_LINKER_OPTION
|
||||
"lld"
|
||||
CACHE STRING "Linker to be used")
|
||||
set(USER_LINKER_OPTION_VALUES "lld" "gold" "bfd")
|
||||
set_property(CACHE USER_LINKER_OPTION PROPERTY STRINGS ${USER_LINKER_OPTION_VALUES})
|
||||
list(
|
||||
FIND
|
||||
USER_LINKER_OPTION_VALUES
|
||||
${USER_LINKER_OPTION}
|
||||
USER_LINKER_OPTION_INDEX)
|
||||
|
||||
if(${USER_LINKER_OPTION_INDEX} EQUAL -1)
|
||||
message(
|
||||
STATUS
|
||||
"Using custom linker: '${USER_LINKER_OPTION}', explicitly supported entries are ${USER_LINKER_OPTION_VALUES}")
|
||||
endif()
|
||||
|
||||
function(configure_linker project_name)
|
||||
if(NOT ENABLE_USER_LINKER)
|
||||
return()
|
||||
endif()
|
||||
|
||||
set(LINKER_FLAG "-fuse-ld=${USER_LINKER_OPTION}")
|
||||
|
||||
check_cxx_compiler_flag(${LINKER_FLAG} CXX_SUPPORTS_USER_LINKER)
|
||||
if(CXX_SUPPORTS_USER_LINKER)
|
||||
target_compile_options(${project_name} INTERFACE ${LINKER_FLAG})
|
||||
endif()
|
||||
endfunction()
|
18
cmake/PreventInSourceBuilds.cmake
Normal file
18
cmake/PreventInSourceBuilds.cmake
Normal file
@ -0,0 +1,18 @@
|
||||
#
|
||||
# This function will prevent in-source builds
|
||||
function(AssureOutOfSourceBuilds)
|
||||
# make sure the user doesn't play dirty with symlinks
|
||||
get_filename_component(srcdir "${CMAKE_SOURCE_DIR}" REALPATH)
|
||||
get_filename_component(bindir "${CMAKE_BINARY_DIR}" REALPATH)
|
||||
|
||||
# disallow in-source builds
|
||||
if("${srcdir}" STREQUAL "${bindir}")
|
||||
message("######################################################")
|
||||
message("Warning: in-source builds are disabled")
|
||||
message("Please create a separate build directory and run cmake from there")
|
||||
message("######################################################")
|
||||
message(FATAL_ERROR "Quitting configuration")
|
||||
endif()
|
||||
endfunction()
|
||||
|
||||
assureoutofsourcebuilds()
|
67
cmake/Sanitizers.cmake
Normal file
67
cmake/Sanitizers.cmake
Normal file
@ -0,0 +1,67 @@
|
||||
function(enable_sanitizers project_name)
|
||||
|
||||
if(CMAKE_CXX_COMPILER_ID STREQUAL "GNU" OR CMAKE_CXX_COMPILER_ID MATCHES ".*Clang")
|
||||
option(ENABLE_COVERAGE "Enable coverage reporting for gcc/clang" OFF)
|
||||
|
||||
if(ENABLE_COVERAGE)
|
||||
target_compile_options(${project_name} INTERFACE --coverage -O0 -g)
|
||||
target_link_libraries(${project_name} INTERFACE --coverage)
|
||||
endif()
|
||||
|
||||
set(SANITIZERS "")
|
||||
|
||||
option(ENABLE_SANITIZER_ADDRESS "Enable address sanitizer" OFF)
|
||||
if(ENABLE_SANITIZER_ADDRESS)
|
||||
list(APPEND SANITIZERS "address")
|
||||
endif()
|
||||
|
||||
option(ENABLE_SANITIZER_LEAK "Enable leak sanitizer" OFF)
|
||||
if(ENABLE_SANITIZER_LEAK)
|
||||
list(APPEND SANITIZERS "leak")
|
||||
endif()
|
||||
|
||||
option(ENABLE_SANITIZER_UNDEFINED_BEHAVIOR "Enable undefined behavior sanitizer" OFF)
|
||||
if(ENABLE_SANITIZER_UNDEFINED_BEHAVIOR)
|
||||
list(APPEND SANITIZERS "undefined")
|
||||
endif()
|
||||
|
||||
option(ENABLE_SANITIZER_THREAD "Enable thread sanitizer" OFF)
|
||||
if(ENABLE_SANITIZER_THREAD)
|
||||
if("address" IN_LIST SANITIZERS OR "leak" IN_LIST SANITIZERS)
|
||||
message(WARNING "Thread sanitizer does not work with Address and Leak sanitizer enabled")
|
||||
else()
|
||||
list(APPEND SANITIZERS "thread")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
option(ENABLE_SANITIZER_MEMORY "Enable memory sanitizer" OFF)
|
||||
if(ENABLE_SANITIZER_MEMORY AND CMAKE_CXX_COMPILER_ID MATCHES ".*Clang")
|
||||
message(WARNING "Memory sanitizer requires all the code (including libc++) to be MSan-instrumented otherwise it reports false positives")
|
||||
if("address" IN_LIST SANITIZERS
|
||||
OR "thread" IN_LIST SANITIZERS
|
||||
OR "leak" IN_LIST SANITIZERS)
|
||||
message(WARNING "Memory sanitizer does not work with Address, Thread and Leak sanitizer enabled")
|
||||
else()
|
||||
list(APPEND SANITIZERS "memory")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
list(
|
||||
JOIN
|
||||
SANITIZERS
|
||||
","
|
||||
LIST_OF_SANITIZERS)
|
||||
|
||||
endif()
|
||||
|
||||
if(LIST_OF_SANITIZERS)
|
||||
if(NOT
|
||||
"${LIST_OF_SANITIZERS}"
|
||||
STREQUAL
|
||||
"")
|
||||
target_compile_options(${project_name} INTERFACE -fsanitize=${LIST_OF_SANITIZERS})
|
||||
target_link_options(${project_name} INTERFACE -fsanitize=${LIST_OF_SANITIZERS})
|
||||
endif()
|
||||
endif()
|
||||
|
||||
endfunction()
|
42
cmake/StandardProjectSettings.cmake
Normal file
42
cmake/StandardProjectSettings.cmake
Normal file
@ -0,0 +1,42 @@
|
||||
# Set a default build type if none was specified
|
||||
if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES)
|
||||
message(STATUS "Setting build type to 'RelWithDebInfo' as none was specified.")
|
||||
set(CMAKE_BUILD_TYPE
|
||||
RelWithDebInfo
|
||||
CACHE STRING "Choose the type of build." FORCE)
|
||||
# Set the possible values of build type for cmake-gui, ccmake
|
||||
set_property(
|
||||
CACHE CMAKE_BUILD_TYPE
|
||||
PROPERTY STRINGS
|
||||
"Debug"
|
||||
"Release"
|
||||
"MinSizeRel"
|
||||
"RelWithDebInfo")
|
||||
endif()
|
||||
|
||||
# Generate compile_commands.json to make it easier to work with clang based tools
|
||||
set(CMAKE_EXPORT_COMPILE_COMMANDS ON)
|
||||
|
||||
option(ENABLE_IPO "Enable Interprocedural Optimization, aka Link Time Optimization (LTO)" OFF)
|
||||
|
||||
if(ENABLE_IPO)
|
||||
include(CheckIPOSupported)
|
||||
check_ipo_supported(
|
||||
RESULT
|
||||
result
|
||||
OUTPUT
|
||||
output)
|
||||
if(result)
|
||||
set(CMAKE_INTERPROCEDURAL_OPTIMIZATION ON)
|
||||
else()
|
||||
message(SEND_ERROR "IPO is not supported: ${output}")
|
||||
endif()
|
||||
endif()
|
||||
if(CMAKE_CXX_COMPILER_ID MATCHES ".*Clang")
|
||||
add_compile_options(-fcolor-diagnostics)
|
||||
elseif(CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
|
||||
add_compile_options(-fdiagnostics-color=always)
|
||||
else()
|
||||
message(STATUS "No colored compiler diagnostic set for '${CMAKE_CXX_COMPILER_ID}' compiler.")
|
||||
endif()
|
||||
|
41
cmake/StaticAnalyzers.cmake
Normal file
41
cmake/StaticAnalyzers.cmake
Normal file
@ -0,0 +1,41 @@
|
||||
option(ENABLE_CPPCHECK "Enable static analysis with cppcheck" OFF)
|
||||
option(ENABLE_CLANG_TIDY "Enable static analysis with clang-tidy" OFF)
|
||||
option(ENABLE_INCLUDE_WHAT_YOU_USE "Enable static analysis with include-what-you-use" OFF)
|
||||
|
||||
if(ENABLE_CPPCHECK)
|
||||
find_program(CPPCHECK cppcheck)
|
||||
if(CPPCHECK)
|
||||
set(CMAKE_CXX_CPPCHECK
|
||||
${CPPCHECK}
|
||||
--suppress=missingInclude
|
||||
--enable=all
|
||||
--inline-suppr
|
||||
--inconclusive)
|
||||
if(WARNINGS_AS_ERRORS)
|
||||
list(APPEND CMAKE_CXX_CPPCHECK --error-exitcode=2)
|
||||
endif()
|
||||
else()
|
||||
message(SEND_ERROR "cppcheck requested but executable not found")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
if(ENABLE_CLANG_TIDY)
|
||||
find_program(CLANGTIDY clang-tidy)
|
||||
if(CLANGTIDY)
|
||||
set(CMAKE_CXX_CLANG_TIDY ${CLANGTIDY} -extra-arg=-Wno-unknown-warning-option)
|
||||
if(WARNINGS_AS_ERRORS)
|
||||
list(APPEND CMAKE_CXX_CLANG_TIDY -warnings-as-errors=*)
|
||||
endif()
|
||||
else()
|
||||
message(SEND_ERROR "clang-tidy requested but executable not found")
|
||||
endif()
|
||||
endif()
|
||||
|
||||
if(ENABLE_INCLUDE_WHAT_YOU_USE)
|
||||
find_program(INCLUDE_WHAT_YOU_USE include-what-you-use)
|
||||
if(INCLUDE_WHAT_YOU_USE)
|
||||
set(CMAKE_CXX_INCLUDE_WHAT_YOU_USE ${INCLUDE_WHAT_YOU_USE})
|
||||
else()
|
||||
message(SEND_ERROR "include-what-you-use requested but executable not found")
|
||||
endif()
|
||||
endif()
|
14
conanfile.py
Normal file
14
conanfile.py
Normal file
@ -0,0 +1,14 @@
|
||||
from conans import ConanFile
|
||||
|
||||
|
||||
class CppStarterProject(ConanFile):
|
||||
name = "IntegratorBD"
|
||||
version = "0.1"
|
||||
requires = (
|
||||
"catch2/2.13.7",
|
||||
"docopt.cpp/0.6.2",
|
||||
"fmt/8.0.1",
|
||||
"spdlog/1.9.2",
|
||||
"eigen/3.4.0"
|
||||
)
|
||||
generators = "cmake", "gcc", "txt", "cmake_find_package"
|
25
src/CMakeLists.txt
Normal file
25
src/CMakeLists.txt
Normal file
@ -0,0 +1,25 @@
|
||||
find_package(fmt)
|
||||
find_package(spdlog)
|
||||
find_package(Eigen3)
|
||||
|
||||
# Generic test that uses conan libs
|
||||
add_library(integratoren SHARED LiveAgg.cpp Rod2d.cpp Simulation.cpp
|
||||
Simulation.h Integratoren2d_forceless.cpp
|
||||
Calculation.cpp Calculation.h Compute.cpp Compute.h)
|
||||
target_include_directories(integratoren PUBLIC .)
|
||||
target_link_libraries(
|
||||
integratoren
|
||||
PRIVATE project_options
|
||||
project_warnings
|
||||
fmt::fmt
|
||||
spdlog::spdlog
|
||||
Eigen3::Eigen3)
|
||||
|
||||
add_executable(main main.cpp)
|
||||
target_link_libraries(
|
||||
main
|
||||
PRIVATE project_options
|
||||
project_warnings
|
||||
integratoren
|
||||
Eigen3::Eigen3
|
||||
)
|
37
src/Calculation.cpp
Normal file
37
src/Calculation.cpp
Normal file
@ -0,0 +1,37 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#include "Calculation.h"
|
||||
|
||||
#include <utility>
|
||||
|
||||
|
||||
void Calculation::run(size_t steps) {
|
||||
for (size_t step = 0; step < steps; ++step) {
|
||||
m_integrator(rod, sim);
|
||||
for (auto &comp: computes) { comp.eval(rod); }
|
||||
}
|
||||
}
|
||||
|
||||
const Rod2d &Calculation::getRod() const {
|
||||
return rod;
|
||||
}
|
||||
|
||||
Calculation::Calculation(std::function<void(Rod2d &, Simulation &)> t_integrator,
|
||||
std::initializer_list<std::pair<Compute::Type, size_t>> t_computes, double deltaT,
|
||||
size_t seed)
|
||||
: sim(deltaT, seed), m_integrator(
|
||||
std::move(t_integrator)) {
|
||||
for (const auto &pair: t_computes) {
|
||||
computes.emplace_back(rod, pair.first, pair.second);
|
||||
}
|
||||
}
|
||||
|
||||
const std::vector<Compute> &Calculation::getComputes() const {
|
||||
return computes;
|
||||
}
|
||||
|
||||
const Simulation &Calculation::getSim() const {
|
||||
return sim;
|
||||
}
|
36
src/Calculation.h
Normal file
36
src/Calculation.h
Normal file
@ -0,0 +1,36 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#ifndef MYPROJECT_CALCULATION_H
|
||||
#define MYPROJECT_CALCULATION_H
|
||||
|
||||
#include "Rod2d.hpp"
|
||||
#include "Simulation.h"
|
||||
#include "functional"
|
||||
#include "Compute.h"
|
||||
|
||||
|
||||
class Calculation {
|
||||
private:
|
||||
Rod2d rod = Rod2d(1.0);
|
||||
Simulation sim;
|
||||
std::function<void(Rod2d &, Simulation &)> m_integrator;
|
||||
std::vector<Compute> computes;
|
||||
public:
|
||||
const Simulation &getSim() const;
|
||||
|
||||
public:
|
||||
explicit Calculation(std::function<void(Rod2d &, Simulation &)> t_integrator,
|
||||
std::initializer_list<std::pair<Compute::Type, size_t>> t_computes, double deltaT,
|
||||
size_t seed);
|
||||
|
||||
[[nodiscard]] const std::vector<Compute> &getComputes() const;
|
||||
|
||||
void run(size_t steps);
|
||||
|
||||
[[nodiscard]] const Rod2d &getRod() const;
|
||||
};
|
||||
|
||||
|
||||
#endif //MYPROJECT_CALCULATION_H
|
69
src/Compute.cpp
Normal file
69
src/Compute.cpp
Normal file
@ -0,0 +1,69 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#include "Compute.h"
|
||||
|
||||
#include <utility>
|
||||
#include <iostream>
|
||||
#include "Rod2d.hpp"
|
||||
|
||||
void Compute::evalMSD(const Rod2d &rod2D) {
|
||||
const auto &new_pos = rod2D.getPos();
|
||||
auto old_pos = start_rod.getPos();
|
||||
auto msd = (new_pos - old_pos).squaredNorm();
|
||||
agg.feed(msd);
|
||||
}
|
||||
|
||||
void Compute::evalOAF(const Rod2d &rod2D) {
|
||||
const auto &new_e = rod2D.getE();
|
||||
auto old_e = start_rod.getE();
|
||||
auto oaf = old_e.dot(new_e);
|
||||
agg.feed(oaf);
|
||||
}
|
||||
|
||||
void Compute::eval_empXX(const Rod2d & /*rod2D*/) {
|
||||
//TODO
|
||||
}
|
||||
|
||||
void Compute::eval_empYY(const Rod2d & /*rod2D*/) {
|
||||
//TODO
|
||||
}
|
||||
|
||||
void Compute::eval(const Rod2d &rod2D) {
|
||||
time_step++;
|
||||
if (time_step % every == 0){
|
||||
switch (type) {
|
||||
case Type::msd:
|
||||
evalMSD(rod2D);
|
||||
break;
|
||||
case Type::oaf:
|
||||
evalOAF(rod2D);
|
||||
break;
|
||||
case Type::empxx:
|
||||
eval_empXX(rod2D);
|
||||
break;
|
||||
case Type::empyy:
|
||||
eval_empYY(rod2D);
|
||||
break;
|
||||
}
|
||||
start_rod = rod2D;
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
Compute::Compute(Rod2d rod, Type t_type, size_t t_every)
|
||||
: start_rod(std::move(rod)), agg({}), every(t_every), time_step(0), type(t_type) {
|
||||
}
|
||||
|
||||
const LiveAgg &Compute::getAgg() const {
|
||||
return agg;
|
||||
}
|
||||
|
||||
Compute::Type Compute::getType() const {
|
||||
return type;
|
||||
}
|
||||
|
||||
double Compute::getTime() const {
|
||||
return static_cast<double>(every);
|
||||
}
|
46
src/Compute.h
Normal file
46
src/Compute.h
Normal file
@ -0,0 +1,46 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#ifndef MYPROJECT_COMPUTE_H
|
||||
#define MYPROJECT_COMPUTE_H
|
||||
|
||||
|
||||
#include "LiveAgg.hpp"
|
||||
#include "Rod2d.hpp"
|
||||
|
||||
class Compute {
|
||||
|
||||
public:
|
||||
enum class Type {
|
||||
msd, oaf, empxx, empyy
|
||||
};
|
||||
|
||||
explicit Compute(Rod2d rod, Type t_type, size_t t_every);
|
||||
|
||||
void eval(const Rod2d &rod2D);
|
||||
|
||||
void evalMSD(const Rod2d &rod2D);
|
||||
|
||||
void evalOAF(const Rod2d &rod2D);
|
||||
|
||||
void eval_empXX(const Rod2d &rod2D);
|
||||
|
||||
void eval_empYY(const Rod2d &rod2D);
|
||||
|
||||
[[nodiscard]] const LiveAgg &getAgg() const;
|
||||
|
||||
[[nodiscard]] Type getType() const;
|
||||
|
||||
double getTime() const;
|
||||
|
||||
private:
|
||||
Rod2d start_rod;
|
||||
LiveAgg agg;
|
||||
size_t every;
|
||||
size_t time_step;
|
||||
Type type;
|
||||
};
|
||||
|
||||
|
||||
#endif //MYPROJECT_COMPUTE_H
|
141
src/Integratoren2d_forceless.cpp
Normal file
141
src/Integratoren2d_forceless.cpp
Normal file
@ -0,0 +1,141 @@
|
||||
//
|
||||
// Created by jholder on 21.10.21.
|
||||
//
|
||||
|
||||
#include "Integratoren2d_forceless.h"
|
||||
|
||||
Eigen::Vector2d ortho(Eigen::Vector2d e) {
|
||||
return Eigen::Vector2d{-e[1], e[0]};
|
||||
}
|
||||
|
||||
Eigen::Matrix2d mat(Eigen::Vector2d e) {
|
||||
Eigen::Matrix2d matrix;
|
||||
matrix << e, ortho(e);
|
||||
|
||||
return matrix;
|
||||
}
|
||||
|
||||
void Integratoren2d_forceless::Set0_deterministic(Rod2d &rod2D, Simulation & /*sim*/) {
|
||||
auto trans_lab = Eigen::Vector2d({0, 0.01});
|
||||
rod2D.setPos(rod2D.getPos() + trans_lab);
|
||||
Eigen::Rotation2D<double> rot(0.1);
|
||||
rod2D.setE(rot * rod2D.getE());
|
||||
}
|
||||
|
||||
void Integratoren2d_forceless::Set1_Euler(Rod2d &rod2D, Simulation &sim) {
|
||||
auto std = sim.getSTD(); // sqrt(2*delta_T)
|
||||
//translation
|
||||
Eigen::Vector2d rand = {sim.getNorm(std), sim.getNorm(std)}; //gaussian noise
|
||||
Eigen::Vector2d trans_part = rod2D.getDiff_Sqrt() * rand; //translation vector in Particle System
|
||||
Eigen::Vector2d trans_lab = rod2D.getE_Base_matrix() * trans_part;
|
||||
|
||||
//rotation
|
||||
double rot = sim.getNorm(std) * rod2D.getDRot_Sqrt();// rotationsmatrix verwenden.
|
||||
Eigen::Vector2d e = rod2D.getE();
|
||||
Eigen::Vector2d new_e = e + rot * ortho(e);
|
||||
new_e.normalize();
|
||||
//apply
|
||||
rod2D.setPos(rod2D.getPos() + trans_lab);
|
||||
rod2D.setE(new_e);
|
||||
|
||||
}
|
||||
|
||||
void Integratoren2d_forceless::Set2_Heun(Rod2d &rod2D, Simulation &sim) {
|
||||
// Predict with Euler
|
||||
auto std = sim.getSTD();
|
||||
|
||||
Eigen::Vector2d rand = Eigen::Vector2d(sim.getNorm(std), sim.getNorm(std));
|
||||
Eigen::Vector2d trans_part = rod2D.getDiff_Sqrt() * rand; //translation vector in Particle System
|
||||
Eigen::Vector2d trans_lab = rod2D.getE_Base_matrix() * trans_part;
|
||||
Eigen::Vector2d pos_predictor = rod2D.getPos() + trans_lab;
|
||||
//rotation
|
||||
double rot_predict = sim.getNorm(std) * rod2D.getDRot_Sqrt();// rotationsmatrix verwenden.
|
||||
Eigen::Vector2d e = rod2D.getE();
|
||||
Eigen::Vector2d delta_e_predict = rot_predict * ortho(e);
|
||||
Eigen::Vector2d e_predict = (e + delta_e_predict).normalized();
|
||||
|
||||
|
||||
double rot = sim.getNorm(std) * rod2D.getDRot_Sqrt();
|
||||
Eigen::Vector2d e_integrated = e + 0.5 * (rot * ortho(e) + rot * ortho(e_predict));
|
||||
//apply
|
||||
rod2D.setPos(pos_predictor);
|
||||
rod2D.setE(e_integrated.normalized());
|
||||
}
|
||||
|
||||
constexpr double kBT = 1.0;
|
||||
|
||||
void Integratoren2d_forceless::Set3_Exact(Rod2d &rod2D, Simulation &sim) {
|
||||
auto std = sim.getSTD();
|
||||
//translation
|
||||
Eigen::Vector2d rand = {sim.getNorm(std), sim.getNorm(std)}; //gaussian noise
|
||||
Eigen::Vector2d trans_part = rod2D.getDiff_Sqrt() * rand; //translation vector in Particle System
|
||||
Eigen::Vector2d trans_lab = rod2D.getE_Base_matrix() * trans_part;
|
||||
|
||||
//rotation
|
||||
double rot = sim.getNorm(std) * rod2D.getDRot_Sqrt();
|
||||
Eigen::Vector2d e = rod2D.getE();
|
||||
auto correction = -0.5 * pow(rod2D.getDRot(), 2) / pow(kBT, 2) * sim.getMDeltaT();
|
||||
|
||||
Eigen::Vector2d delta_e = correction * e + rot * ortho(e);
|
||||
|
||||
//apply
|
||||
rod2D.setPos(rod2D.getPos() + trans_lab);
|
||||
rod2D.setE((e + delta_e).normalized());
|
||||
|
||||
}
|
||||
|
||||
const Eigen::Vector2d Integratoren2d_forceless::unitVec = {1, 0};
|
||||
|
||||
//this is a slow implementation to keep the same data structure for performance analysis this must be altered
|
||||
void Integratoren2d_forceless::Set4_BDAS(Rod2d &rod2D, Simulation &sim) {
|
||||
auto std = sim.getSTD();
|
||||
//translation
|
||||
auto rand = Eigen::Vector2d(sim.getNorm(std), sim.getNorm(std));
|
||||
auto trans_part = rod2D.getDiff_Sqrt() * rand; //translation vector in Particle System
|
||||
Eigen::Rotation2D rotMat(acos(unitVec.dot(rod2D.getE())));
|
||||
auto trans_lab = rotMat * trans_part;
|
||||
|
||||
auto rot = Eigen::Rotation2D<double>(sim.getNorm(std) * rod2D.getDRot_Sqrt());
|
||||
Eigen::Rotation2Dd rotation(rot);
|
||||
auto e_new = (rotation.toRotationMatrix() * rod2D.getE()).normalized();
|
||||
|
||||
// Normalisation should not be necessary if a proper angular representation is used.
|
||||
// But with vector e it is done in case of numerical errors
|
||||
|
||||
rod2D.setPos(rod2D.getPos() + trans_lab);
|
||||
rod2D.setE(e_new);
|
||||
}
|
||||
|
||||
Eigen::Matrix2d Integratoren2d_forceless::e_2_matrix(Eigen::Vector2d m_e) {
|
||||
Eigen::Matrix2d mat;
|
||||
mat << m_e[0], -m_e[1],
|
||||
m_e[1], m_e[0];
|
||||
return mat;
|
||||
}
|
||||
|
||||
void Integratoren2d_forceless::Set5_MBD(Rod2d &/*rod2D*/, Simulation &/*sim*/) {
|
||||
/*
|
||||
auto std = sim.getSTD();
|
||||
|
||||
auto rand = Eigen::Vector2d(sim.getNorm(std), sim.getNorm(std));
|
||||
auto trans_part = rod2D.getDiff_Sqrt() * rand; //translation vector in Particle System
|
||||
auto trans_lab = rod2D.getE_Base_matrix() * trans_part;
|
||||
auto pos_predictor = rod2D.getPos() + trans_lab;
|
||||
|
||||
//rotation
|
||||
auto rot_predict = Eigen::Rotation2D<double>(sim.getNorm(std) * rod2D.getDRot_Sqrt());// rotationsmatrix verwenden.
|
||||
auto e = rod2D.getE();
|
||||
auto delta_e_predict = rot_predict * ortho(e);
|
||||
auto e_predict = (e + delta_e_predict).normalized();
|
||||
|
||||
auto std_combined = rod2D.getDiff() + rod2D.getE_Base_matrix() * rod2D.getDiff(); //old + new diff
|
||||
|
||||
auto rot = Eigen::Rotation2D<double>(sim.getNorm(std) * rod2D.getDRot_Sqrt());
|
||||
auto e_integrated = e + 0.5 * (rot * ortho(e) + rot * ortho(e_predict));
|
||||
//apply
|
||||
rod2D.setPos(pos_predictor);
|
||||
rod2D.setE(e_integrated.normalized());
|
||||
*/
|
||||
}
|
||||
|
||||
|
30
src/Integratoren2d_forceless.h
Normal file
30
src/Integratoren2d_forceless.h
Normal file
@ -0,0 +1,30 @@
|
||||
//
|
||||
// Created by jholder on 21.10.21.
|
||||
//
|
||||
|
||||
#ifndef MYPROJECT_INTEGRATOREN2D_FORCELESS_H
|
||||
#define MYPROJECT_INTEGRATOREN2D_FORCELESS_H
|
||||
#include "Rod2d.hpp"
|
||||
#include "Simulation.h"
|
||||
|
||||
class Integratoren2d_forceless {
|
||||
public:
|
||||
static void Set1_Euler(Rod2d &rod2D, Simulation &sim);
|
||||
|
||||
static void Set2_Heun(Rod2d &rod2D, Simulation &sim);
|
||||
|
||||
static void Set3_Exact(Rod2d &rod2D, Simulation &sim);
|
||||
|
||||
static void Set4_BDAS(Rod2d &rod2D, Simulation &sim);
|
||||
|
||||
static const Eigen::Vector2d unitVec;
|
||||
|
||||
static Eigen::Matrix2d e_2_matrix(Eigen::Vector2d m_e) ;
|
||||
|
||||
static void Set5_MBD(Rod2d &rod2D, Simulation &sim);
|
||||
|
||||
static void Set0_deterministic(Rod2d &rod2D, Simulation &sim);
|
||||
};
|
||||
|
||||
|
||||
#endif //MYPROJECT_INTEGRATOREN2D_FORCELESS_H
|
33
src/LiveAgg.cpp
Normal file
33
src/LiveAgg.cpp
Normal file
@ -0,0 +1,33 @@
|
||||
#include "LiveAgg.hpp"
|
||||
#include <cmath>
|
||||
LiveAgg::LiveAgg() : num_of_data(0), mean(0.0), S(0.0)
|
||||
{
|
||||
}
|
||||
|
||||
double LiveAgg::getSD() const noexcept
|
||||
{
|
||||
return S / (num_of_data - 1);
|
||||
}
|
||||
|
||||
double LiveAgg::getSEM() const noexcept
|
||||
{
|
||||
return S / (num_of_data - 1) / std::sqrt(num_of_data);
|
||||
}
|
||||
|
||||
double LiveAgg::getMean() const noexcept
|
||||
{
|
||||
return mean;
|
||||
}
|
||||
|
||||
void LiveAgg::feed(double value) noexcept
|
||||
{
|
||||
num_of_data += 1;
|
||||
auto delta = value - mean;
|
||||
mean += delta / num_of_data;
|
||||
auto delta2 = value - mean;
|
||||
S += delta * delta2;
|
||||
}
|
||||
int LiveAgg::getNumPoints() const noexcept
|
||||
{
|
||||
return num_of_data;
|
||||
}
|
20
src/LiveAgg.hpp
Normal file
20
src/LiveAgg.hpp
Normal file
@ -0,0 +1,20 @@
|
||||
#ifndef LIVEAGG_H
|
||||
#define LIVEAGG_H
|
||||
|
||||
|
||||
class LiveAgg
|
||||
{
|
||||
public:
|
||||
LiveAgg();
|
||||
[[nodiscard]] double getSD() const noexcept;
|
||||
[[nodiscard]] double getSEM() const noexcept;
|
||||
[[nodiscard]] double getMean() const noexcept;
|
||||
[[nodiscard]] int getNumPoints() const noexcept;
|
||||
void feed(double value) noexcept;
|
||||
private:
|
||||
int num_of_data;
|
||||
double mean;
|
||||
double S;
|
||||
};
|
||||
|
||||
#endif // LIVEAGG_H
|
76
src/Rod2d.cpp
Normal file
76
src/Rod2d.cpp
Normal file
@ -0,0 +1,76 @@
|
||||
#include "Rod2d.hpp"
|
||||
#include "Eigen/Dense"
|
||||
|
||||
constexpr double M_Pl = 3.141592653589793238462643383279502884; /* pi */
|
||||
|
||||
void sqrt(Eigen::Matrix2d &mat){
|
||||
const auto size = static_cast<size_t>(mat.size());
|
||||
for (size_t i = 0; i < size; i++) {
|
||||
mat.data()[i] = sqrt(mat.data()[i]);
|
||||
}
|
||||
}
|
||||
Rod2d::Rod2d(double L) : m_pos({0, 0}), m_e({1, 0}) {
|
||||
assert(L>=1.0);
|
||||
if (L == 1.0) {
|
||||
m_D_rot = 3.0;
|
||||
m_Diff << 1, 0,
|
||||
0, 1;
|
||||
} else {
|
||||
const double D0 = 3.0 * M_Pl / L;
|
||||
const double p = L;
|
||||
auto D_para = D0 / (M_Pl * 2.0) * (log(p) - 0.207 + 0.980 / p - 0.133 / (p * p));
|
||||
auto D_ortho = D0 / (M_Pl * 2.0) * (log(p) + 0.839 + 0.185 / p + 0.233 / (p * p));
|
||||
m_D_rot = 3 * D0 / (M_Pl * L * L) * (log(p) - 0.662 + 0.917 / p - 0.050 / (p * p));
|
||||
m_Diff << D_para, 0,
|
||||
0, D_ortho;
|
||||
}
|
||||
m_Diff_sqrt = m_Diff;
|
||||
m_D_rot_sqrt = sqrt(m_D_rot);
|
||||
sqrt(m_Diff_sqrt);
|
||||
}
|
||||
|
||||
void Rod2d::reset() {
|
||||
m_pos = {0, 0};
|
||||
m_e = {1, 0};
|
||||
}
|
||||
|
||||
void Rod2d::setPos(const Eigen::Vector2d &Pos) {
|
||||
m_pos = Pos;
|
||||
}
|
||||
|
||||
double Rod2d::getDRot() const {
|
||||
return m_D_rot;
|
||||
}
|
||||
|
||||
const Eigen::Vector2d &Rod2d::getPos() const {
|
||||
return m_pos;
|
||||
}
|
||||
|
||||
const Eigen::Matrix2d &Rod2d::getDiff() const {
|
||||
return m_Diff;
|
||||
}
|
||||
|
||||
const Eigen::Matrix2d &Rod2d::getDiff_Sqrt() const {
|
||||
return m_Diff_sqrt;
|
||||
}
|
||||
|
||||
double Rod2d::getDRot_Sqrt() const {
|
||||
return m_D_rot_sqrt;
|
||||
}
|
||||
|
||||
const Eigen::Vector2d &Rod2d::getE() const {
|
||||
return m_e;
|
||||
}
|
||||
|
||||
void Rod2d::setE(const Eigen::Vector2d &mE) {
|
||||
m_e = mE;
|
||||
}
|
||||
|
||||
Eigen::Matrix2d Rod2d::getE_Base_matrix() const {
|
||||
Eigen::Matrix2d mat;
|
||||
mat << m_e[0], -m_e[1],
|
||||
m_e[1], m_e[0];
|
||||
return mat;
|
||||
}
|
||||
|
||||
|
37
src/Rod2d.hpp
Normal file
37
src/Rod2d.hpp
Normal file
@ -0,0 +1,37 @@
|
||||
#pragma once
|
||||
#include <Eigen/Geometry>
|
||||
#include <Eigen/Dense>
|
||||
class Rod2d
|
||||
{
|
||||
public:
|
||||
explicit Rod2d(double L);
|
||||
void reset();
|
||||
|
||||
[[nodiscard]] const Eigen::Matrix2d &getDiff() const;
|
||||
|
||||
[[nodiscard]] double getDRot() const;
|
||||
|
||||
[[nodiscard]] const Eigen::Vector2d &getPos() const;
|
||||
|
||||
void setPos(const Eigen::Vector2d &Pos);
|
||||
|
||||
[[nodiscard]] const Eigen::Matrix2d &getDiff_Sqrt() const;
|
||||
|
||||
[[nodiscard]] const Eigen::Vector2d &getE() const;
|
||||
|
||||
void setE(const Eigen::Vector2d &mE);
|
||||
|
||||
[[nodiscard]] double getDRot_Sqrt() const;
|
||||
|
||||
Eigen::Matrix2d getE_Base_matrix() const;
|
||||
|
||||
private:
|
||||
Eigen::Matrix2d m_Diff;
|
||||
Eigen::Matrix2d m_Diff_sqrt;
|
||||
double m_D_rot;
|
||||
double m_D_rot_sqrt;
|
||||
Eigen::Vector2d m_pos; // position
|
||||
Eigen::Vector2d m_e;
|
||||
};
|
||||
|
||||
|
21
src/Simulation.cpp
Normal file
21
src/Simulation.cpp
Normal file
@ -0,0 +1,21 @@
|
||||
//
|
||||
// Created by jholder on 21.10.21.
|
||||
//
|
||||
|
||||
#include "Simulation.h"
|
||||
|
||||
double Simulation::getNorm(double t_norm) {
|
||||
return t_norm*m_norm(m_generator);
|
||||
}
|
||||
|
||||
Simulation::Simulation(double t_delta_T, size_t seed): m_delta_T(t_delta_T),m_std(std::sqrt(t_delta_T*2.0)), m_generator(seed), m_norm(0, 1.0) {
|
||||
|
||||
}
|
||||
|
||||
double Simulation::getMDeltaT() const {
|
||||
return m_delta_T;
|
||||
}
|
||||
|
||||
double Simulation::getSTD() const {
|
||||
return m_std;
|
||||
}
|
26
src/Simulation.h
Normal file
26
src/Simulation.h
Normal file
@ -0,0 +1,26 @@
|
||||
//
|
||||
// Created by jholder on 21.10.21.
|
||||
//
|
||||
|
||||
#ifndef MYPROJECT_SIMULATION_H
|
||||
#define MYPROJECT_SIMULATION_H
|
||||
|
||||
|
||||
#include <random>
|
||||
|
||||
class Simulation {
|
||||
public:
|
||||
explicit Simulation(double t_delta_T, size_t seed);
|
||||
double getNorm(double t_norm);
|
||||
private:
|
||||
double m_delta_T;
|
||||
double m_std;
|
||||
std::mt19937_64 m_generator;
|
||||
std::normal_distribution<double> m_norm;
|
||||
public:
|
||||
[[nodiscard]] double getMDeltaT() const;
|
||||
[[nodiscard]] double getSTD() const;
|
||||
};
|
||||
|
||||
|
||||
#endif //MYPROJECT_SIMULATION_H
|
130
src/legacy/Integratoren.cpp
Normal file
130
src/legacy/Integratoren.cpp
Normal file
@ -0,0 +1,130 @@
|
||||
#include "Integratoren.hpp"
|
||||
constexpr double kBT = 1.0;
|
||||
|
||||
void Integratoren::integrateITOEuler_1(Rod2d &rod)
|
||||
{
|
||||
//DLOG_SCOPE_F(1,"Integrateing Rod2d:");
|
||||
double movePara = std::sqrt(2.0 * rod.Dpara * rod.deltaT) * rod.dis(rod.generator);
|
||||
double moveOrtho = std::sqrt(2.0 * rod.Dortho * rod.deltaT) * rod.dis(rod.generator);
|
||||
|
||||
double tmpx1 = rod.x1 + movePara * rod.e1 - moveOrtho * rod.e2;
|
||||
double tmpx2 = rod.x2 + movePara * rod.e2 + moveOrtho * rod.e1;
|
||||
|
||||
double rodOrtho = std::sqrt(2.0 * rod.Drot * rod.deltaT) * rod.dis(rod.generator);
|
||||
double tmpe1 = rod.e1 - rodOrtho * rod.e2;
|
||||
double tmpe2 = rod.e2 + rodOrtho * rod.e1;
|
||||
|
||||
rod.x1 = tmpx1;
|
||||
rod.x2 = tmpx2;
|
||||
rod.e1 = tmpe1;
|
||||
rod.e2 = tmpe2;
|
||||
rod.normalize();
|
||||
}
|
||||
|
||||
void Integratoren::integrateITOHeun_2(Rod2d &rod)
|
||||
{
|
||||
//DLOG_SCOPE_F(1,"Integrateing Rod2d:");
|
||||
|
||||
double movePara = std::sqrt(2.0 * rod.Dpara * rod.deltaT) * rod.dis(rod.generator);
|
||||
double moveOrtho = std::sqrt(2.0 * rod.Dortho * rod.deltaT) * rod.dis(rod.generator);
|
||||
|
||||
double tmpx1 = rod.x1 + movePara * rod.e1 - moveOrtho * rod.e2;
|
||||
double tmpx2 = rod.x2 + movePara * rod.e2 + moveOrtho * rod.e1;
|
||||
|
||||
|
||||
double rodOrtho = std::sqrt(2.0 * rod.Drot * rod.deltaT) * rod.dis(rod.generator);
|
||||
double e1 = rod.e1 - rodOrtho * rod.e1;
|
||||
double e2 = rod.e2 + rodOrtho * rod.e2;
|
||||
double norm = std::sqrt(e1 * e1 + e2 * e2);
|
||||
e1 /= norm;
|
||||
e2 /= norm;
|
||||
|
||||
double rodOrtho1 = std::sqrt(2.0 * rod.Drot * rod.deltaT);
|
||||
double rodOrthoRand = rod.dis(rod.generator);
|
||||
double tmpe1 = rod.e1 - 0.5 * (rodOrtho1 * rod.e2 + rodOrtho1 * e2) * rodOrthoRand;//TODO Check if 0.5 faktor
|
||||
double tmpe2 = rod.e2 + 0.5 * (rodOrtho1 * rod.e1 + rodOrtho1 * e1) * rodOrthoRand;
|
||||
|
||||
rod.x1 = tmpx1;
|
||||
rod.x2 = tmpx2;
|
||||
rod.e1 = tmpe1;
|
||||
rod.e2 = tmpe2;
|
||||
rod.normalize();
|
||||
}
|
||||
|
||||
|
||||
void Integratoren::integrateExact_3(Rod2d &rod)
|
||||
{
|
||||
//DLOG_SCOPE_F(1,"Integrateing Rod2d:");
|
||||
|
||||
double movePara = std::sqrt(2.0 * rod.Dpara * rod.deltaT) * rod.dis(rod.generator);
|
||||
double moveOrtho = std::sqrt(2.0 * rod.Dortho * rod.deltaT) * rod.dis(rod.generator);
|
||||
|
||||
double tmpx1 = rod.x1 + movePara * rod.e1 - moveOrtho * rod.e2;
|
||||
double tmpx2 = rod.x2 + movePara * rod.e2 + moveOrtho * rod.e1;
|
||||
|
||||
double rodOrtho = std::sqrt(2.0 * rod.Drot * rod.deltaT) * rod.dis(rod.generator);
|
||||
double korr = -0.5 * rod.Drot * rod.Drot / kBT / kBT * rod.deltaT;
|
||||
double tmpe1 = rod.e1 - rodOrtho * rod.e2 + korr * rod.e1;
|
||||
double tmpe2 = rod.e2 + rodOrtho * rod.e1 + korr * rod.e2;
|
||||
|
||||
rod.x1 = tmpx1;
|
||||
rod.x2 = tmpx2;
|
||||
rod.e1 = tmpe1;
|
||||
rod.e2 = tmpe2;
|
||||
rod.normalize();
|
||||
}
|
||||
|
||||
void Integratoren::integrateBDAS_4(Rod2d &rod)
|
||||
{
|
||||
double deltaRTpara = std::sqrt(2.0 * rod.Dpara * rod.deltaT) * rod.dis(rod.generator);
|
||||
double deltaRTortho = std::sqrt(2.0 * rod.Dortho * rod.deltaT) * rod.dis(rod.generator);
|
||||
double tmpx1 = rod.x1 + deltaRTpara * rod.e1 - deltaRTortho * rod.e2;
|
||||
double tmpx2 = rod.x2 + deltaRTpara * rod.e2 + deltaRTortho * rod.e1;
|
||||
|
||||
double deltaPhi = std::sqrt(2.0 * rod.Drot * rod.deltaT) * rod.dis(rod.generator);
|
||||
double tmpe1 = rod.e1 * std::cos(deltaPhi) - rod.e2 * std::sin(deltaPhi);
|
||||
double tmpe2 = rod.e1 * std::sin(deltaPhi) + rod.e2 * std::cos(deltaPhi);
|
||||
|
||||
rod.x1 = tmpx1;
|
||||
rod.x2 = tmpx2;
|
||||
rod.e1 = tmpe1;
|
||||
rod.e2 = tmpe2;
|
||||
rod.normalize();
|
||||
}
|
||||
|
||||
void Integratoren::integrateMBD_5(Rod2d &rod)
|
||||
{
|
||||
/*
|
||||
double movePara = std::sqrt(2.0*rod.Dpara*rod.deltaT)*rod.dis(rod.generator); // Taken from euler
|
||||
double moveOrtho = std::sqrt(2.0*rod.Dortho*rod.deltaT)*rod.dis(rod.generator); // taken from euler
|
||||
double x1 = rod.x1 + movePara*rod.e1- moveOrtho*rod.e2;
|
||||
double x2 = rod.x2 + movePara*rod.e2+ moveOrtho*rod.e1;
|
||||
*/
|
||||
// unused without force
|
||||
double rodOrtho = std::sqrt(2.0 * rod.Drot * rod.deltaT) * rod.dis(rod.generator);
|
||||
double e1 = rod.e1 - rodOrtho * rod.e2;
|
||||
double e2 = rod.e2 + rodOrtho * rod.e1;
|
||||
double norm = std::sqrt(e1 * e1 + e2 * e2);
|
||||
e1 /= norm;
|
||||
e2 /= norm;
|
||||
|
||||
double movePara1 = std::sqrt(1.0 * rod.Dpara * rod.deltaT) * rod.dis(rod.generator);// If difussion would be time dependend, average of the predicted D and now D
|
||||
double moveOrtho1 = std::sqrt(1.0 * rod.Dortho * rod.deltaT) * rod.dis(rod.generator);
|
||||
double movePara2 = std::sqrt(1.0 * rod.Dpara * rod.deltaT) * rod.dis(rod.generator);// If difussion would be time dependend, average of the predicted D and now D
|
||||
double moveOrtho2 = std::sqrt(1.0 * rod.Dortho * rod.deltaT) * rod.dis(rod.generator);
|
||||
double tmpx1 = rod.x1 + (movePara1 * rod.e1 - moveOrtho1 * rod.e2) + (movePara2 * e1 - moveOrtho2 * e2);
|
||||
double tmpx2 = rod.x2 + (movePara1 * rod.e2 + moveOrtho1 * rod.e1) + (movePara2 * e2 + moveOrtho2 * e1);
|
||||
|
||||
|
||||
double rodOrtho1 = std::sqrt(2.0 * rod.Drot * rod.deltaT);
|
||||
double rodOrtho2 = rod.dis(rod.generator);
|
||||
|
||||
double tmpe1 = rod.e1 - 0.5 * (rodOrtho1 * rod.e2 + rodOrtho1 * e2) * rodOrtho2;
|
||||
double tmpe2 = rod.e2 + 0.5 * (rodOrtho1 * rod.e1 + rodOrtho1 * e1) * rodOrtho2;
|
||||
|
||||
rod.x1 = tmpx1;
|
||||
rod.x2 = tmpx2;
|
||||
rod.e1 = tmpe1;
|
||||
rod.e2 = tmpe2;
|
||||
rod.normalize();
|
||||
}
|
19
src/legacy/Integratoren.hpp
Normal file
19
src/legacy/Integratoren.hpp
Normal file
@ -0,0 +1,19 @@
|
||||
#ifndef INTEGRATOREN_HPP
|
||||
#define INTEGRATOREN_HPP
|
||||
#include "Rod2d.hpp"
|
||||
|
||||
|
||||
class Integratoren
|
||||
{
|
||||
public:
|
||||
static void integrateITOEuler_1(Rod2d &rod);
|
||||
|
||||
static void integrateITOHeun_2(Rod2d &rod);
|
||||
|
||||
static void integrateExact_3(Rod2d &rod);
|
||||
|
||||
static void integrateBDAS_4(Rod2d &rod);
|
||||
|
||||
static void integrateMBD_5(Rod2d &rod);
|
||||
};
|
||||
#endif// INTEGRATOREN_HPP
|
6
src/legacy/Simulation2d.cpp
Normal file
6
src/legacy/Simulation2d.cpp
Normal file
@ -0,0 +1,6 @@
|
||||
#include "Simulation2d.hpp"
|
||||
#include <vector>
|
||||
#include<iostream>
|
||||
#include "LiveAgg.hpp"
|
||||
template <void (*T)(Rod2d &)>
|
||||
std::vector<double> simulate(double deltaT, int seed, int meanSteps);
|
157
src/legacy/Simulation2d.hpp
Normal file
157
src/legacy/Simulation2d.hpp
Normal file
@ -0,0 +1,157 @@
|
||||
#ifndef SIMULATION2D_HPP
|
||||
#define SIMULATION2D_HPP
|
||||
#include "Rod2d.hpp"
|
||||
#include "LiveAgg.hpp"
|
||||
#include <fstream>
|
||||
#include <iostream>
|
||||
/* This is used to calculate the convergence order of the particles
|
||||
*/
|
||||
|
||||
inline void printProgress(double progress)
|
||||
{
|
||||
const int barWidth = 70;
|
||||
std::cout << "[";
|
||||
const int pos = static_cast<int>(barWidth * progress);
|
||||
for (int i = 0; i < barWidth; ++i) {
|
||||
if (i < pos) {
|
||||
std::cout << "=";
|
||||
} else if (i == pos) {
|
||||
std::cout << ">";
|
||||
} else {
|
||||
std::cout << " ";
|
||||
}
|
||||
}
|
||||
std::cout << "] " << int(progress * 100.0) << " % \r";
|
||||
std::cout.flush();
|
||||
}
|
||||
|
||||
template<void (*T)(Rod2d &)>
|
||||
void simulate(double L, int seed, const std::string &filename)
|
||||
{
|
||||
// we now simulate the msd after 10 steps
|
||||
|
||||
|
||||
Rod2d rod(L, 1e-5, seed);
|
||||
const int sampleWidth = 1000;
|
||||
std::vector<LiveAgg> msd(sampleWidth, LiveAgg());
|
||||
std::vector<LiveAgg> oaf(sampleWidth, LiveAgg());
|
||||
std::vector<LiveAgg> empxx(sampleWidth, LiveAgg());
|
||||
std::vector<LiveAgg> empyy(sampleWidth, LiveAgg());
|
||||
std::vector<double> xPos(sampleWidth, 0.0);
|
||||
std::vector<double> yPos(sampleWidth, 0.0);
|
||||
std::vector<double> e1(sampleWidth, 0.0);
|
||||
std::vector<double> e2(sampleWidth, 0.0);
|
||||
std::vector<double> targetMSD(sampleWidth, 0.0);
|
||||
std::vector<double> targetOAF(sampleWidth, 0.0);
|
||||
std::vector<double> targetEMPXX(sampleWidth, 0.0);
|
||||
std::vector<double> targetEMPYY(sampleWidth, 0.0);
|
||||
std::vector<size_t> samplePoints(sampleWidth, 1);
|
||||
size_t temp = 1;
|
||||
const double Dmean = 0.5 * (rod.Dpara + rod.Dortho);
|
||||
const double deltaD = rod.Dortho - rod.Dpara;
|
||||
for (size_t i = 0; i < samplePoints.size(); ++i) {
|
||||
samplePoints[i] = temp;
|
||||
temp += 100;
|
||||
const double time = static_cast<double>(temp) * rod.deltaT;
|
||||
targetMSD[i] = 4.0 * 0.5 * (rod.Dpara + rod.Dortho) * time;
|
||||
targetOAF[i] = std::exp(-rod.Drot * time);
|
||||
const double u = 4.0;
|
||||
targetEMPXX[i] = Dmean - deltaD / 2.0 * (1 - exp(-u * rod.Drot * time)) / u / rod.Drot / time;
|
||||
targetEMPYY[i] = Dmean + deltaD / 2.0 * (1 - exp(-u * rod.Drot * time)) / u / rod.Drot / time;
|
||||
}
|
||||
unsigned long long int iteration = 0;
|
||||
//const unsigned long long int maxItr = ((long int)10000)*1000000;
|
||||
const unsigned long long int maxItr = 10000000;
|
||||
const unsigned long long int updateInter = 10000;
|
||||
while (iteration < maxItr) {
|
||||
T(rod);
|
||||
iteration++;
|
||||
for (size_t i = 0; i < samplePoints.size(); ++i) {
|
||||
const size_t sample = samplePoints[i];
|
||||
if (iteration % sample == 0) {
|
||||
msd[i].feed((rod.x1 - xPos[i]) * (rod.x1 - xPos[i]) + (rod.x2 - yPos[i]) * (rod.x2 - yPos[i]));
|
||||
oaf[i].feed(rod.e1 * e1[i] + rod.e2 * e2[i]);
|
||||
empxx[i].feed(std::pow((rod.x1 - xPos[i]) * e1[i] + (rod.x2 - yPos[i]) * e2[i], 2));
|
||||
empyy[i].feed(std::pow((rod.x1 - xPos[i]) * e2[i] - (rod.x2 - yPos[i]) * e1[i], 2));
|
||||
xPos[i] = rod.x1;
|
||||
yPos[i] = rod.x2;
|
||||
e1[i] = rod.e1;
|
||||
e2[i] = rod.e2;
|
||||
}
|
||||
}
|
||||
if (iteration % updateInter == 0) {
|
||||
printProgress(static_cast<double>(iteration)/ maxItr);
|
||||
}
|
||||
}
|
||||
|
||||
std::cout << "\n";
|
||||
|
||||
std::ofstream fileMSD(filename + "_" + std::to_string(L) + "_MSD.out");
|
||||
std::ofstream fileOAF(filename + "_" + std::to_string(L) + "_OAF.out");
|
||||
std::ofstream fileXX(filename + "_" + std::to_string(L) + "_XX.out");
|
||||
std::ofstream fileYY(filename + "_" + std::to_string(L) + "_YY.out");
|
||||
|
||||
for (size_t i = 0; i < samplePoints.size(); ++i) {
|
||||
fileMSD << static_cast<double>(samplePoints[i]) * rod.deltaT << "\t" << targetMSD[i] << "\t" << msd[i].getMean() << "\t" << msd[i].getSEM() << "\t" << msd[i].getSD() << "\t" << msd[i].getNumPoints() << "\n";
|
||||
fileOAF << static_cast<double>(samplePoints[i]) * rod.deltaT << "\t" << targetOAF[i] << "\t" << oaf[i].getMean() << "\t" << oaf[i].getSEM() << "\t" << oaf[i].getSD() << "\t" << oaf[i].getNumPoints() << "\n";
|
||||
fileXX << static_cast<double>(samplePoints[i]) * rod.deltaT << "\t" << targetEMPXX[i] << "\t" << empxx[i].getMean() << "\t" << empxx[i].getSEM() << "\t" << empxx[i].getSD() << "\t" << empxx[i].getNumPoints() << "\n";
|
||||
fileYY << static_cast<double>(samplePoints[i]) * rod.deltaT << "\t" << targetEMPYY[i] << "\t" << empyy[i].getMean() << "\t" << empyy[i].getSEM() << "\t" << empyy[i].getSD() << "\t" << empyy[i].getNumPoints() << "\n";
|
||||
}
|
||||
fileMSD.close();
|
||||
fileOAF.close();
|
||||
fileXX.close();
|
||||
fileYY.close();
|
||||
}
|
||||
|
||||
|
||||
template<void (*T)(Rod2d &)>
|
||||
void konvergenz(double L, int seed, double deltaT, const std::string &filename)
|
||||
{
|
||||
// we now simulate the msd after 10 steps
|
||||
Rod2d rod(L, deltaT, seed);
|
||||
const double time = 2;
|
||||
const int steps = static_cast<int>(time / deltaT);
|
||||
const int minSteps = 1000;
|
||||
|
||||
//const double targetMSD = 4.0*0.5*(rod.Dpara+rod.Dortho)*time;
|
||||
const double targetOAF = std::exp(-rod.Drot * time);
|
||||
/*const double u = 4.0;
|
||||
const double Dmean = 0.5*(rod.Dpara+rod.Dortho);
|
||||
const double deltaD = rod.Dortho - rod.Dpara;
|
||||
const double targetEMPXX = Dmean-deltaD/2.0*(1 - exp(-u*rod.Drot*time))/u/rod.Drot / time;
|
||||
const double targetEMPYY = Dmean+deltaD/2.0*(1 - exp(-u*rod.Drot*time))/u/rod.Drot / time;*/
|
||||
//LiveAgg msd;
|
||||
LiveAgg oaf;
|
||||
//LiveAgg empxx;
|
||||
//LiveAgg empyy;
|
||||
int meanCount = 0;
|
||||
while (meanCount < minSteps or std::abs(targetOAF - oaf.getMean()) < oaf.getSEM() * 10) {
|
||||
//reset the position
|
||||
rod.reset();
|
||||
for (int i = 0; i < steps; ++i) {
|
||||
T(rod);
|
||||
}
|
||||
//msd.feed(rod.x1*rod.x1+rod.x2*rod.x2);
|
||||
oaf.feed(rod.e1);
|
||||
//.feed(rod.x1*rod.x1/2/time);
|
||||
//empyy.feed(rod.x2*rod.x2/2/time);
|
||||
if (meanCount % 100000 == 0) {
|
||||
//std::cout<<msd.getSEM()<<" "<<std::abs(targetMSD-msd.getMean());
|
||||
std::cout << "\t" << oaf.getSEM() << " " << std::abs(targetOAF - oaf.getMean()) << std::endl;
|
||||
//std::cout<<"\t"<<empxx.getSEM()<<" "<<std::abs(targetEMPXX-empxx.getMean());
|
||||
//std::cout<<"\t"<<empyy.getSEM()<<" "<<std::abs(targetEMPYY-empyy.getMean())<<std::endl;;
|
||||
}
|
||||
if (meanCount % 1000000 == 0) {
|
||||
std::ofstream fileOAF(filename + "_length=" + std::to_string(L) + "_dt=" + std::to_string(rod.deltaT) + "_OAF.out");
|
||||
fileOAF << rod.deltaT << "\t" << std::abs(targetOAF - oaf.getMean()) << "\t" << oaf.getSEM() << "\n";
|
||||
fileOAF.close();
|
||||
}
|
||||
meanCount++;
|
||||
}
|
||||
std::ofstream fileOAF(filename + "_length=" + std::to_string(L) + "_dt=" + std::to_string(rod.deltaT) + "_OAF.out");
|
||||
fileOAF << rod.deltaT << "\t" << std::abs(targetOAF - oaf.getMean()) << "\t" << oaf.getSEM() << "\n";
|
||||
fileOAF.close();
|
||||
}
|
||||
|
||||
|
||||
#endif// SIMULATION2D_HPP
|
72
src/legacy/main.cpp
Normal file
72
src/legacy/main.cpp
Normal file
@ -0,0 +1,72 @@
|
||||
#include <random>
|
||||
#include <span>
|
||||
#include <string>
|
||||
#include "legacy/Integratoren.hpp"
|
||||
#include "legacy/Simulation2d.hpp"
|
||||
const int seed = 12345;
|
||||
[[maybe_unused]] void overTime(int sim)
|
||||
{
|
||||
const std::vector<double> Length = { 1.0, 1.3974, 20.0 };
|
||||
const int numCases = 5;
|
||||
int i = 0;
|
||||
for (auto L : Length) {
|
||||
if (sim == numCases * i) {
|
||||
simulate<Integratoren::integrateITOEuler_1>(L, seed, "1");
|
||||
}
|
||||
if (sim == numCases * i + 1) {
|
||||
simulate<Integratoren::integrateITOHeun_2>(L, seed, "2");
|
||||
}
|
||||
if (sim == numCases * i + 2) {
|
||||
simulate<Integratoren::integrateExact_3>(L, seed, "3");
|
||||
}
|
||||
if (sim == numCases * i + 3) {
|
||||
simulate<Integratoren::integrateBDAS_4>(L, seed, "4");
|
||||
}
|
||||
if (sim == numCases * i + 4) {
|
||||
simulate<Integratoren::integrateMBD_5>(L, seed, "5");
|
||||
}
|
||||
i++;
|
||||
}
|
||||
}
|
||||
|
||||
[[maybe_unused]]void konvergenz(int sim)
|
||||
{
|
||||
const std::vector<double> Length = { 1.0, 1.3974, 20.0 };
|
||||
const std::vector<double> DELTAT = { 2.0, 1.0, 0.5, 0.25, 0.2, 0.1, 0.05, 0.025, 0.02, 0.01, 0.005, 0.0025, 0.200, 0.001, 0.0005, 0.00025 };
|
||||
int i = 0;
|
||||
for (auto dt : DELTAT) {
|
||||
|
||||
for (auto L : Length) {
|
||||
if (sim == i++) {
|
||||
konvergenz<Integratoren::integrateITOEuler_1>(L, seed, dt, "1");
|
||||
}
|
||||
if (sim == i++) {
|
||||
konvergenz<Integratoren::integrateITOHeun_2>(L, seed, dt, "2");
|
||||
}
|
||||
if (sim == i++) {
|
||||
konvergenz<Integratoren::integrateExact_3>(L, seed, dt, "3");
|
||||
}
|
||||
if (sim == i++) {
|
||||
konvergenz<Integratoren::integrateBDAS_4>(L, seed, dt, "4");
|
||||
}
|
||||
if (sim == i++) {
|
||||
konvergenz<Integratoren::integrateMBD_5>(L, seed, dt, "5");
|
||||
}
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
int main(int argc, char *argv[])
|
||||
{
|
||||
int sim;
|
||||
auto args = std::span(argv, size_t(argc));
|
||||
if (argc > 1) {
|
||||
sim = std::stoi(args[1]) - 1;
|
||||
} else {
|
||||
sim = 0;
|
||||
}
|
||||
overTime(sim);
|
||||
//konvergenz(sim);
|
||||
return 0;
|
||||
}
|
40
src/main.cpp
Normal file
40
src/main.cpp
Normal file
@ -0,0 +1,40 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#include <iostream>
|
||||
#include "Calculation.h"
|
||||
#include "Integratoren2d_forceless.h"
|
||||
|
||||
int main() {
|
||||
constexpr int numStep = 1000000;
|
||||
Calculation euler(Integratoren2d_forceless::Set4_BDAS, {{Compute::Type::msd, 1},
|
||||
{Compute::Type::msd, 2},
|
||||
{Compute::Type::msd, 4},
|
||||
{Compute::Type::msd, 8},
|
||||
{Compute::Type::msd, 16},
|
||||
{Compute::Type::oaf, 1},
|
||||
{Compute::Type::oaf, 2},
|
||||
{Compute::Type::oaf, 4},
|
||||
{Compute::Type::oaf, 8},
|
||||
{Compute::Type::oaf, 16}}, 0.01, 12345);
|
||||
euler.run(numStep);
|
||||
for (const auto &com: euler.getComputes()) {
|
||||
if(com.getType()!=Compute::Type::msd)
|
||||
continue;
|
||||
auto time = euler.getSim().getMDeltaT() * com.getTime();
|
||||
auto targetMSD = 4.0 * 0.5 * (euler.getRod().getDiff().trace()) * time;
|
||||
std::cout << "MSD: " << com.getAgg().getMean()
|
||||
<< " +- "
|
||||
<< com.getAgg().getSEM()
|
||||
<< " " << targetMSD << std::endl;
|
||||
}
|
||||
for (const auto &com: euler.getComputes()) {
|
||||
if(com.getType()!=Compute::Type::oaf)
|
||||
continue;
|
||||
auto time = euler.getSim().getMDeltaT() * com.getTime();
|
||||
auto targetOAF = std::exp(-euler.getRod().getDRot() * time);
|
||||
std::cout <<"OAF: " << com.getAgg().getMean()
|
||||
<< " +- " << com.getAgg().getSEM() << " " << targetOAF << std::endl;
|
||||
}
|
||||
}
|
32
test/CMakeLists.txt
Normal file
32
test/CMakeLists.txt
Normal file
@ -0,0 +1,32 @@
|
||||
find_package(Catch2 REQUIRED)
|
||||
find_package(Eigen3)
|
||||
|
||||
include(CTest)
|
||||
include(Catch)
|
||||
|
||||
add_library(catch_main STATIC catch_main.cpp)
|
||||
target_link_libraries(catch_main PUBLIC Catch2::Catch2)
|
||||
target_link_libraries(catch_main PRIVATE project_options)
|
||||
|
||||
set(TEST_FILES
|
||||
test_LiveAgg.cpp
|
||||
test_Rod2d.cpp
|
||||
test_Calculation.cpp test_Compute.cpp test_Simulation.cpp)
|
||||
|
||||
add_executable(tests ${TEST_FILES})
|
||||
target_link_libraries(tests PRIVATE project_warnings project_options catch_main Eigen3::Eigen3 integratoren)
|
||||
|
||||
# automatically discover tests that are defined in catch based test files you can modify the unittests. Set TEST_PREFIX
|
||||
# to whatever you want, or use different for different binaries
|
||||
catch_discover_tests(
|
||||
tests
|
||||
TEST_PREFIX
|
||||
"unittests."
|
||||
REPORTER
|
||||
xml
|
||||
OUTPUT_DIR
|
||||
.
|
||||
OUTPUT_PREFIX
|
||||
"unittests."
|
||||
OUTPUT_SUFFIX
|
||||
.xml)
|
5
test/catch_main.cpp
Normal file
5
test/catch_main.cpp
Normal file
@ -0,0 +1,5 @@
|
||||
#define CATCH_CONFIG_MAIN // This tells the catch header to generate a main
|
||||
|
||||
#include <catch2/catch.hpp>
|
||||
|
||||
|
52
test/test_Calculation.cpp
Normal file
52
test/test_Calculation.cpp
Normal file
@ -0,0 +1,52 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#include <catch2/catch.hpp>
|
||||
#include <Calculation.h>
|
||||
#include "LiveAgg.hpp"
|
||||
#include "Integratoren2d_forceless.h"
|
||||
|
||||
TEST_CASE("Basic run of Calculation") {
|
||||
Calculation euler(Integratoren2d_forceless::Set1_Euler, {{Compute::Type::msd, 10},
|
||||
{Compute::Type::oaf, 10}}, 1, 1);
|
||||
Calculation heun(Integratoren2d_forceless::Set2_Heun, {{Compute::Type::msd, 10},
|
||||
{Compute::Type::oaf, 10}}, 1, 1);
|
||||
Calculation exact(Integratoren2d_forceless::Set3_Exact, {{Compute::Type::msd, 10},
|
||||
{Compute::Type::oaf, 10}}, 1, 1);
|
||||
Calculation bdas(Integratoren2d_forceless::Set4_BDAS, {{Compute::Type::msd, 10},
|
||||
{Compute::Type::oaf, 10}}, 1, 1);
|
||||
SECTION("Euler") {
|
||||
euler.run(100);
|
||||
CHECK(euler.getRod().getE().norm() == Catch::Detail::Approx(1.0));
|
||||
CHECK(euler.getComputes()[0].getType() == Compute::Type::msd);
|
||||
CHECK(euler.getComputes()[1].getType() == Compute::Type::oaf);
|
||||
}SECTION("Heun") {
|
||||
heun.run(100);
|
||||
CHECK(heun.getRod().getE().norm() == Catch::Detail::Approx(1.0));
|
||||
}SECTION("Exact") {
|
||||
exact.run(100);
|
||||
CHECK(exact.getRod().getE().norm() == Catch::Detail::Approx(1.0));
|
||||
}SECTION("Euler") {
|
||||
bdas.run(100);
|
||||
CHECK(bdas.getRod().getE().norm() == Catch::Detail::Approx(1.0));
|
||||
}
|
||||
|
||||
SECTION("MSD") {
|
||||
euler.run(100);
|
||||
CHECK(euler.getComputes()[0].getAgg().getNumPoints() == 10);
|
||||
CHECK(euler.getComputes()[1].getAgg().getNumPoints() == 10);
|
||||
}SECTION("Deterministic") {
|
||||
Calculation determ(Integratoren2d_forceless::Set0_deterministic,
|
||||
{{Compute::Type::msd, 1},
|
||||
{Compute::Type::oaf, 1}}, 1, 1);
|
||||
determ.run(10);
|
||||
auto time = 1;
|
||||
|
||||
auto targetMSD = pow(0.01, 2) * time;
|
||||
auto targetOAF = cos(0.1);
|
||||
|
||||
CHECK(determ.getComputes()[0].getAgg().getMean() == Catch::Detail::Approx(targetMSD));
|
||||
CHECK(determ.getComputes()[1].getAgg().getMean() == Catch::Detail::Approx(targetOAF));
|
||||
}
|
||||
}
|
19
test/test_Compute.cpp
Normal file
19
test/test_Compute.cpp
Normal file
@ -0,0 +1,19 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#include <Compute.h>
|
||||
#include "catch2/catch.hpp"
|
||||
#include "Integratoren2d_forceless.h"
|
||||
|
||||
TEST_CASE("Compute") {
|
||||
auto rod = Rod2d(1.0);
|
||||
auto com = Compute(rod, Compute::Type::msd, 10);
|
||||
SECTION("Mean of same values") {
|
||||
for (int i = 0; i < 100; ++i) {
|
||||
com.eval(rod);
|
||||
}
|
||||
CHECK(com.getAgg().getNumPoints()==10);
|
||||
CHECK(com.getAgg().getMean()==0.0);
|
||||
}
|
||||
}
|
16
test/test_LiveAgg.cpp
Normal file
16
test/test_LiveAgg.cpp
Normal file
@ -0,0 +1,16 @@
|
||||
//
|
||||
// Created by jholder on 21.10.21.
|
||||
//
|
||||
|
||||
#include <catch2/catch.hpp>
|
||||
#include "LiveAgg.hpp"
|
||||
|
||||
TEST_CASE("LiveAgg") {
|
||||
auto ag = LiveAgg();
|
||||
SECTION("Mean of same values"){
|
||||
ag.feed(1.0);
|
||||
ag.feed(1.0);
|
||||
REQUIRE(ag.getMean()==1.0);
|
||||
REQUIRE(ag.getNumPoints()==2);
|
||||
}
|
||||
}
|
47
test/test_Rod2d.cpp
Normal file
47
test/test_Rod2d.cpp
Normal file
@ -0,0 +1,47 @@
|
||||
//
|
||||
// Created by jholder on 21.10.21.
|
||||
//
|
||||
|
||||
#include "Rod2d.hpp"
|
||||
#include <catch2/catch.hpp>
|
||||
#include <Eigen/Dense>
|
||||
|
||||
TEST_CASE("Rods") {
|
||||
Rod2d sphere(1);
|
||||
Rod2d rod(2);
|
||||
SECTION("Checking translation") {
|
||||
rod.setPos(rod.getPos() + Eigen::Vector2d(1, -1));
|
||||
auto newPos = rod.getPos();
|
||||
REQUIRE(newPos[0] == 1);
|
||||
REQUIRE(newPos[1] == -1);
|
||||
REQUIRE(sphere.getDiff_Sqrt()(0,0) == 1.0);
|
||||
REQUIRE(sphere.getDiff_Sqrt()(0,1) == 0.0);
|
||||
REQUIRE(sphere.getDiff_Sqrt()(1,0) == 0.0);
|
||||
REQUIRE(sphere.getDiff_Sqrt()(1,1) == 1.0);
|
||||
}SECTION("Checking rotation") {
|
||||
SECTION("Forwards == e 90"){
|
||||
//
|
||||
// =====
|
||||
//
|
||||
rod.setE({0, 1}); // Lab system is 90 degree rotated
|
||||
auto test = Eigen::Vector2d ({1,0});
|
||||
auto erg = (rod.getE_Base_matrix()*test).normalized();
|
||||
auto e = rod.getE();
|
||||
REQUIRE(erg.isApprox(e));
|
||||
|
||||
}
|
||||
SECTION("Forwards == e 45"){
|
||||
// o
|
||||
// o
|
||||
// o
|
||||
rod.setE(Eigen::Vector2d ({1,1}).normalized()); // Lab system is 90 degree rotated
|
||||
auto test = Eigen::Vector2d ({1,0});
|
||||
auto erg = (rod.getE_Base_matrix()*test).normalized();
|
||||
auto e = rod.getE();
|
||||
REQUIRE(erg.isApprox(e));
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
}
|
27
test/test_Simulation.cpp
Normal file
27
test/test_Simulation.cpp
Normal file
@ -0,0 +1,27 @@
|
||||
//
|
||||
// Created by jholder on 22.10.21.
|
||||
//
|
||||
|
||||
#include <catch2/catch.hpp>
|
||||
#include "Simulation.h"
|
||||
|
||||
TEST_CASE("Simulation") {
|
||||
auto sim = Simulation(1,0);
|
||||
REQUIRE(sim.getSTD()==sqrt(1*2.0));
|
||||
SECTION("Symmetrie"){
|
||||
constexpr int num = 10000000;
|
||||
double sum = 0.0;
|
||||
for (int i = 0; i < num; ++i) {
|
||||
sum += sim.getNorm(1);
|
||||
}
|
||||
CHECK(sum/num == Catch::Detail::Approx(0.0).margin(0.001));
|
||||
}
|
||||
SECTION("STD"){
|
||||
constexpr int num = 10000000;
|
||||
double sum = 0.0;
|
||||
for (int i = 0; i < num; ++i) {
|
||||
sum += pow(sim.getNorm(1),2);
|
||||
}
|
||||
CHECK(sum/num == Catch::Detail::Approx(1.0).margin(0.001));
|
||||
}
|
||||
}
|
Loading…
Reference in New Issue
Block a user